PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G086900.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 246aa MW: 26144.5 Da PI: 9.2782

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G086900.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.3	6.4e-26	20	114	1	83
trihelix 1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 rWt+qe+l+Lie++r +e++ r rg+ ++ ++W++v++++r++g+ r+p+qC+++w+nl+++ykki+e+e+++ + + Sevir.7G086900.3.p 20 RWTRQEILVLIEGKRVVERSGRgRGRgrarggggaggegAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDYKKIREWERGGFAAR-- 108 8**************9999853335577888888888******************************************983322.. PP trihelix 78 tcpyfd 83 + + f Sevir.7G086900.3.p 109 KEASFW 114 234444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.353	20	91	IPR017877	Myb-like domain
Pfam	PF13837	2.2E-11	20	104	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.3E-6	20	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MSSAGEARGV GTGRGSRLPR WTRQEILVLI EGKRVVERSG RGRGRGRARG GGGAGGEGAE 60 PTKWAAVAEY CRRHGVDRGP VQCRKRWSNL AGDYKKIREW ERGGFAARKE ASFWAMRNDA 120 RRERRLPGFF DREVYDILEG RAPGNAAAAA VARPVAMDVE SKEEVAAALD GGARGAEGAG 180 LFSSSEDEDD QEDDAATPSP TPMATPALAP APVALPISGL PAISFALLCC LVNPLLLLLR 240 SYSNV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	49	RGRGRGRARG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269\|PubMed:25770109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G086900.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU949356	1e-155	EU949356.1 Zea mays clone 402974 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025826048.1	1e-111	trihelix transcription factor ASR3-like isoform X1
Refseq	XP_025826049.1	1e-111	trihelix transcription factor ASR3-like isoform X2
Swissprot	Q8VZ20	7e-51	ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBL	A0A2S3I663	1e-109	A0A2S3I663_9POAL; Uncharacterized protein
TrEMBL	A0A2T8IC05	1e-109	A0A2T8IC05_9POAL; Uncharacterized protein
STRING	Si010590m	4e-99	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	6e-45	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G086900.3.p

Publications ? help Back to Top
Vidal EA, et al. Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots. BMC Genomics, 2013. 14: p. 701 [PMID:24119003] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]