PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G087500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 420aa    MW: 44282.2 Da    PI: 10.3704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G087500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.4e-20200249255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  Sevir.7G087500.1.p 200 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEDAAIAYDEAALRFKG 249
                         7********.**********94....45***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.2E-33199258IPR001471AP2/ERF domain
SuperFamilySSF541714.25E-22200258IPR016177DNA-binding domain
SMARTSM003804.8E-38200263IPR001471AP2/ERF domain
PROSITE profilePS5103224.711200257IPR001471AP2/ERF domain
CDDcd000182.77E-30200258No hitNo description
PfamPF008472.1E-13200249IPR001471AP2/ERF domain
PRINTSPR003672.2E-11201212IPR001471AP2/ERF domain
PRINTSPR003672.2E-11223239IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAAVFVVVRA PEAPKSKKAK LKLSSPPTHA RIDRSSSIGD GRRRRRQIDR QLTKVDPRRH  60
GKRPLPADKE EEDQPPPPPP AKHEQLEIEE HRYHVSQLQQ GATFSAGGGG GGSSSSSAAG  120
AAAGPSPEAY AQYYYSARAD HDASAVASAL AHVIRASPDQ LPPHAFGGGG APPGQGDYQQ  180
AAPPAAAAAE EEQAAGRRRH YRGVRQRPWG KWAAEIRDPK KAARVWLGTF DTAEDAAIAY  240
DEAALRFKGT KAKLNFPERV QGRTDMGFLV TRGIPDRHHH QGGAAVTLAA MPPPHRQHHQ  300
TVVPYPDLMQ YAQLLQGGGR GGGGAGDHHA EAAAQQAQAR LMMMARGGVS LPFGAASFSS  360
SSSSAPQILD FSTQQLIRPG PPSPAAAAPS TPSSTTTASS PGGSAWPYGG EHHRNKKDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26199261467ATERF1
3gcc_A4e-26199261467ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G087500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9570621e-145EU957062.1 Zea mays clone 1581709 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012702791.10.0AT-rich interactive domain-containing protein 1A isoform X3
TrEMBLK3Y7W00.0K3Y7W0_SETIT; Uncharacterized protein
STRINGSi010289m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.14e-22related to AP2 6l