PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G088600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 279aa    MW: 28628.9 Da    PI: 4.2983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G088600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-184192156
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Sevir.7G088600.1.p 41 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 92
                        5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-2841100No hitNo description
SuperFamilySSF541714.25E-214299IPR016177DNA-binding domain
PROSITE profilePS5103221.5624299IPR001471AP2/ERF domain
SMARTSM003803.1E-3242105IPR001471AP2/ERF domain
PfamPF008471.0E-104291IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.7E-294299IPR001471AP2/ERF domain
PRINTSPR003671.5E-84354IPR001471AP2/ERF domain
PRINTSPR003671.5E-86581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0010030Biological Processpositive regulation of seed germination
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNFSSYFFSS SSSSADKKSS SSSSKRRQQA AAQPQPDANT TRYLGVRRRP WGRYAAEIRD  60
PATKERHWLG TFDTAEEAAV AYDRAARSLR GARARTNFAY PDLPPGSSIT PYLSPDLTSG  120
DNAGQLLQPF YADPAAASLP AGPAAKGGGD AGGFGAAGDY YASYGGYSAD DMSALMDDLA  180
IPDDIPTDDY GVDAGGAMDL SSVYGGGGGG ANASAGAGGV GWCDASELSA YGASAAASHG  240
VYFEEGYVHS PLFSPMPAVD DACADGFQLG GSSSSYYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-184398662ATERF1
3gcc_A7e-184398662ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00509DAPTransfer from AT5G13910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G088600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741060.0EU974106.1 Zea mays clone 439808 AP2 domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975472.11e-154ethylene-responsive transcription factor LEP
TrEMBLK3YEC41e-152K3YEC4_SETIT; Uncharacterized protein
STRINGSi012587m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-23ERF family protein