PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G111700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 201aa    MW: 22467.9 Da    PI: 5.0434
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G111700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.84.4e-3271241128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGf+F P+deel+v++L++k++  +++  +++++v +++++Pw+L+ k+ +  ++wyfFs++         ++r+t +gyW++   d+ 
  Sevir.7G111700.1.p   7 LPPGFHFFPSDEELIVHFLRRKASMLPCQP-DIVPTVLLNHYNPWELNDKALQAGNRWYFFSHAT--------QSRVTPNGYWSSICADEI 88 
                         79*************************999.99**************966666789******975........5799*********99887 PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v s +g +vglkktL+f  g+ ++g +t+W+mhey+l
  Sevir.7G111700.1.p  89 VES-GGCNVGLKKTLIFSIGEPSEGIETNWIMHEYHL 124
                         777.9******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-424162IPR003441NAC domain
PROSITE profilePS5100538.8797164IPR003441NAC domain
PfamPF023656.2E-218124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MGGSSDLPPG FHFFPSDEEL IVHFLRRKAS MLPCQPDIVP TVLLNHYNPW ELNDKALQAG  60
NRWYFFSHAT QSRVTPNGYW SSICADEIVE SGGCNVGLKK TLIFSIGEPS EGIETNWIMH  120
EYHLLDGRKG SGSSTSTSSS RKLHRNKSHS NTESNWVICR VFDSTCGSQV NYHEEGMELS  180
CLDEVFLSLD DYDEVSLSNN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-35716917170NO APICAL MERISTEM PROTEIN
1ut4_B5e-35716917170NO APICAL MERISTEM PROTEIN
1ut7_A5e-35716917170NO APICAL MERISTEM PROTEIN
1ut7_B5e-35716917170NO APICAL MERISTEM PROTEIN
3swm_A5e-35716920173NAC domain-containing protein 19
3swm_B5e-35716920173NAC domain-containing protein 19
3swm_C5e-35716920173NAC domain-containing protein 19
3swm_D5e-35716920173NAC domain-containing protein 19
3swp_A5e-35716920173NAC domain-containing protein 19
3swp_B5e-35716920173NAC domain-containing protein 19
3swp_C5e-35716920173NAC domain-containing protein 19
3swp_D5e-35716920173NAC domain-containing protein 19
4dul_A5e-35716917170NAC domain-containing protein 19
4dul_B5e-35716917170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G111700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975667.11e-149NAC domain-containing protein 104
SwissprotQ8GWK61e-60NC104_ARATH; NAC domain-containing protein 104
TrEMBLK3YA371e-147K3YA37_SETIT; Uncharacterized protein
STRINGSi011079m1e-148(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-61xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]