PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G117600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23293.7 Da    PI: 7.7018
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G117600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.61.9e-241056248
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++gk+y+
  Sevir.7G117600.1.p 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVVSPHGKIYD 56
                        8********************************************97 PP
2K-box57.46.4e-20751742100
               K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                          + +g+s e++k++  qqe+  L  ei+  q+ +R + Ge d + ++l eLq Le++Le  + +iRs+K++++ ++ie l++ke  lq +n
  Sevir.7G117600.1.p  75 SEMHGESSEQNKTQAIQQEVLALTHEIDLFQKGLRYMHGEnDTNHMNLGELQALENNLEMWVHNIRSQKMQIMSREIEMLRNKEGILQAAN 165
                         5677888999*****************************96799*********************************************** PP

               K-box  92 kaLrkklee 100
                           L+++++e
  Sevir.7G117600.1.p 166 DILQERINE 174
                         ****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-26173IPR002100Transcription factor, MADS-box
CDDcd002651.14E-35271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-24323IPR002100Transcription factor, MADS-box
PfamPF003195.4E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-243859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2481172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.93887178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVVSP HGKIYDLATN  60
GNMQGLIQRY RGTYSEMHGE SSEQNKTQAI QQEVLALTHE IDLFQKGLRY MHGENDTNHM  120
NLGELQALEN NLEMWVHNIR SQKMQIMSRE IEMLRNKEGI LQAANDILQE RINEQNGILN  180
FSGTAMIPQA PFQLTMESNY YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-14193191MEF2C
5f28_B1e-14193191MEF2C
5f28_C1e-14193191MEF2C
5f28_D1e-14193191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G117600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975710.11e-150MADS-box transcription factor 26
SwissprotA2YQK91e-74MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G81e-74MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLK3YEG81e-149K3YEG8_SETIT; Uncharacterized protein
STRINGSi012632m1e-150(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.19e-60AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]