PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G117600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MIKC_MADS
Protein Properties Length: 189aa    MW: 21742 Da    PI: 8.6797
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G117600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.81.7e-241056248
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                        rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++gk+y+
  Sevir.7G117600.2.p 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVVSPHGKIYD 56
                        8********************************************97 PP
2K-box50.77.5e-1875162288
               K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                          + +g+s e++k++  qqe+  L  ei+  q+ +R + Ge d + ++l eLq Le++Le  + +iRs+K++++ ++ie l++k +e++
  Sevir.7G117600.2.p  75 SEMHGESSEQNKTQAIQQEVLALTHEIDLFQKGLRYMHGEnDTNHMNLGELQALENNLEMWVHNIRSQKMQIMSREIEMLRNKINEQN 162
                         5677888999*****************************96799***************************************88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.525161IPR002100Transcription factor, MADS-box
SMARTSM004325.1E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-26173IPR002100Transcription factor, MADS-box
CDDcd002657.72E-36271No hitNo description
PRINTSPR004049.6E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.7E-231055IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-253859IPR002100Transcription factor, MADS-box
PfamPF014869.0E-2181160IPR002487Transcription factor, K-box
PROSITE profilePS5129712.05587176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVVSP HGKIYDLATN  60
GNMQGLIQRY RGTYSEMHGE SSEQNKTQAI QQEVLALTHE IDLFQKGLRY MHGENDTNHM  120
NLGELQALEN NLEMWVHNIR SQKMQIMSRE IEMLRNKINE QNGILNFSGT AMIPQAPFQL  180
TMESNYYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-15193191MEF2C
5f28_B9e-15193191MEF2C
5f28_C9e-15193191MEF2C
5f28_D9e-15193191MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G117600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9761311e-154EU976131.1 Zea mays clone 645550 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975710.11e-136MADS-box transcription factor 26
SwissprotA2YQK93e-63MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-63MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLK3YEG81e-135K3YEG8_SETIT; Uncharacterized protein
STRINGSi012632m1e-135(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-51AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]