PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G120600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Trihelix
Protein Properties Length: 422aa    MW: 44209 Da    PI: 6.5832
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G120600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.73e-1385166286
            trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +++   +       ++++fd+l+
  Sevir.7G120600.1.p  85 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYSKapkSDVQCKNRIDTLKKKYKVERAKPVS-------SWQFFDRLD 166
                         *************************************87788876222667**************99887775.......599999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.5E-2383167No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDDDDDVSPD ASPSPDASPS PASSPGGPPS AALPVADPVT VASAPPGGGY AVALPIHRTA  60
ASLYATAGGG GGGGGGGGGG REDAWSEGAT SALIDAWGER FVALGRGSLR HPQWQEVADA  120
VSSRDGYSKA PKSDVQCKNR IDTLKKKYKV ERAKPVSSWQ FFDRLDFLLA PTYGNKPGSG  180
GGGGGGHNSN SRSPVPAALR VSFPQRSRTP LMPAAASAAK RRPPSPEPSV SSESSDGFPP  240
LPALPAANGK RRRTDEGRAD GGSSGDRTQG LRDLAQAIRR FGEAYERVEA AKLDQAAEME  300
RRRIDFAREL ESQRAQFFLN AQMELTQAKN HASSGVATIP AGATTVGGSS RRMSMATDAG  360
GSSNHHHHSR YRISHGDRHR NAPRSHYQQY HDNNHAAAAA AASEGEQSDE EEEDDEEEES  420
Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G120600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975744.10.0trihelix transcription factor ASIL2
TrEMBLA0A368RUH80.0A0A368RUH8_SETIT; Uncharacterized protein
STRINGSi010246m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.16e-33sequence-specific DNA binding transcription factors