PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G135600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 356aa    MW: 38433 Da    PI: 10.7699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G135600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012128145320
                         ETTTTEEESSHHHHHHHH CS
             zf-C2H2   3 CpdCgksFsrksnLkrHi 20 
                         C  Cg++F+ ++ L rH 
  Sevir.7G135600.1.p 128 CRVCGRRFRARDALLRHF 145
                         *****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.094126154IPR007087Zinc finger, C2H2
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRRRPMTIST RAAAEAPFPG ATPSPMLRPL SFFRRRVLAA ALKLLAPPIS RSLSTAAAPA  60
ARKPSTAVAV LWDLAASRPP TTLPLYDAAV RLHLAATSFG RLRLSAAFVH PCHRLPAPAA  120
PAATTHLCRV CGRRFRARDA LLRHFDAIHA REHAKRLARI DSSRGDRRVR LAAALSLKLS  180
KYEKAARELT AGADAAAATP ADEIGRAGVR VVLTRTPAAS LRERAQQVLD EGSVGCLMLV  240
SGKDELASLL RVARERCVRS VVVGGESGLA RWADVGFSWA EVITGKARTA APSVSGKWRD  300
RDVLKGLEWR YEEDDEEEVV FEDSDGDGAE ELARKSKGKP WWKLDSDGED SSNGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G135600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823075.10.0uncharacterized protein LOC112898963
TrEMBLK3Y8N20.0K3Y8N2_SETIT; Uncharacterized protein
STRINGSi010574m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.12e-45C2H2 family protein