PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G157500.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 258aa    MW: 27652.7 Da    PI: 7.9891
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G157500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.43.5e-12936835
                GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         TplWR+gp  ++ LCnaCG ++r kg+
  Sevir.7G157500.2.p  9 GTPLWRNGPPDKPVLCNACGSRWRTKGS 36
                        6********55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0026148IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-6840No hitNo description
Gene3DG3DSA:3.30.50.102.2E-8936IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.4E-10936IPR000679Zinc finger, GATA-type
CDDcd002023.50E-101035No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MPSTSLARGT PLWRNGPPDK PVLCNACGSR WRTKGSLANY TPMHRKDDID DDEPRVSKLK  60
PPTSKMKSQK KKANLIITEN GPFSSQSFRK MGDADPSNRS SDGSAISYSE SCAPYGAVDA  120
SEISGSAQSH AWESLVPSRK RSCVTRLKPS PVEKLAKDLN SIMHEEQLSY LSGSSEEDLL  180
YHSEAPVGSF ETGSGSVLLR HPNSKSPDEE SEASSIPADD KSHITSESYS GSASVVVHSG  240
NKATVNLKAV TARPPAY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G157500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670300.0BT067030.1 Zea mays full-length cDNA clone ZM_BFb0155L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660940.11e-179LOW QUALITY PROTEIN: GATA transcription factor 26-like
SwissprotQ8W4H12e-50GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A368RVR91e-180A0A368RVR9_SETIT; Uncharacterized protein
STRINGSi011929m1e-176(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.23e-57GATA transcription factor 26