PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G157500.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 256aa    MW: 27340.3 Da    PI: 7.5787
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G157500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA38.51.6e-12634735
                GATA  7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                        t TplWR+gp  ++ LCnaCG ++r kg+
  Sevir.7G157500.3.p  6 TGTPLWRNGPPDKPVLCNACGSRWRTKGS 34
                        78********55555***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0016146IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-8634IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577168.55E-7638No hitNo description
PfamPF003202.3E-10634IPR000679Zinc finger, GATA-type
CDDcd002023.39E-10833No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGNAGTGTPL WRNGPPDKPV LCNACGSRWR TKGSLANYTP MHRKDDIDDD EPRVSKLKPP  60
TSKMKSQKKK ANLIITENGP FSSQSFRKMG DADPSNRSSD GSAISYSESC APYGAVDASE  120
ISGSAQSHAW ESLVPSRKRS CVTRLKPSPV EKLAKDLNSI MHEEQLSYLS GSSEEDLLYH  180
SEAPVGSFET GSGSVLLRHP NSKSPDEESE ASSIPADDKS HITSESYSGS ASVVVHSGNK  240
ATVNLKAVTA RPPAY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G157500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0670300.0BT067030.1 Zea mays full-length cDNA clone ZM_BFb0155L18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660940.11e-179LOW QUALITY PROTEIN: GATA transcription factor 26-like
SwissprotQ8W4H14e-51GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A368RVR90.0A0A368RVR9_SETIT; Uncharacterized protein
STRINGSi011929m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.37e-58GATA transcription factor 26