PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G170200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB
Protein Properties Length: 274aa    MW: 30119.6 Da    PI: 6.6677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G170200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-181865148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed+llv+ v+q+G g+W+++++  g++R++k+c++rw +yl
  Sevir.7G170200.1.p 18 KGPWTSQEDKLLVEHVRQHGEGRWNSVSKVTGLKRSGKSCRLRWVNYL 65
                        79********************************************97 PP
2Myb_DNA-binding54.33.1e-1771115147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Sevir.7G170200.1.p  71 RGKITPQEESIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 115
                         8999******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0331365IPR017930Myb domain
SuperFamilySSF466891.83E-2916112IPR009057Homeodomain-like
SMARTSM007177.7E-161767IPR001005SANT/Myb domain
PfamPF002495.5E-171865IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-231972IPR009057Homeodomain-like
CDDcd001679.81E-122065No hitNo description
PROSITE profilePS5129425.39666120IPR017930Myb domain
SMARTSM007176.6E-1670118IPR001005SANT/Myb domain
PfamPF002499.7E-1571115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2473118IPR009057Homeodomain-like
CDDcd001671.41E-1075116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEGEPLGWGR QEVDGWRKGP WTSQEDKLLV EHVRQHGEGR WNSVSKVTGL KRSGKSCRLR  60
WVNYLRPDLK RGKITPQEES IIVQLHALWG NRWSTIARSL PGRTDNEIKN YWRTHFKKGK  120
PSKNIERARA RFLKQRQEMQ SQKQQQLLQM GHVVAKDENE DGGARTVTAA DDDDRGSAVI  180
DDACAAPAVA EAAAGGHHHE DLIMHDAMDF MCPMSCALLL HCAVQGGGTG SCCGSTASDE  240
YGSSEEDGAT WGSLWNLDGV VDDAAGGGPC TLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-261811827126MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G170200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096201e-125AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978126.10.0transcription repressor MYB6
TrEMBLK3Y9D00.0K3Y9D0_SETIT; Uncharacterized protein
STRINGSi010822m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13480.11e-63myb domain protein 79