PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G191100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family YABBY
Protein Properties Length: 240aa    MW: 25156.8 Da    PI: 7.6439
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G191100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY159.42.8e-49252115159
               YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee........................ 70 
                            eq+Cyv+C+ C+tilav vP +slfk+vtvrCGhC++llsvnl+     +aa +++l   ++++                        
  Sevir.7G191100.2.p  25 AEQEQLCYVHCKCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPTAAaNNQLPFGGQQQallsptsphglldemmpfqqapsl 115
                         6789*******************************************99976655055555555555888999999*87777777665543 PP

               YABBY  71 .lleelkveeenlksnvekeesastsvssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrik 141
                                         + ++ + st +s ++                   +  ++ ++p+     +r  ekrqrvPsaynrfik+eiqrik
  Sevir.7G191100.2.p 116 tS-------------AEPASACVSTITSINNScggrnnasamsmappplkPAPQEPQLPKSAAsGNRTAEKRQRVPSAYNRFIKDEIQRIK 193
                         21.............22222222222222222223333333344677667677777888876658************************** PP

               YABBY 142 asnPdishreafsaaakn 159
                         asnPdi+hreafsaaakn
  Sevir.7G191100.2.p 194 ASNPDITHREAFSAAAKN 211
                         *****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-5726211IPR006780YABBY protein
SuperFamilySSF470954.04E-5168209IPR009071High mobility group box domain
CDDcd000845.51E-4176203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMSSVPEAAF AMDQHLAPPQ LQTAAEQEQL CYVHCKCCDT ILAVGVPCSS LFKTVTVRCG  60
HCANLLSVNL RGLLLPTAAA NNQLPFGGQQ QALLSPTSPH GLLDEMMPFQ QAPSLTSAEP  120
ASACVSTITS INNSCGGRNN ASAMSMAPPP LKPAPQEPQL PKSAASGNRT AEKRQRVPSA  180
YNRFIKDEIQ RIKASNPDIT HREAFSAAAK NEGGECMLFK DGLYAAAAAA ASSMGIAPF*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}.
UniProtMay be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G191100.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976365.11e-165protein YABBY 5
SwissprotQ01JG23e-94YAB5_ORYSI; Protein YABBY 5
SwissprotQ0JBF03e-94YAB5_ORYSJ; Protein YABBY 5
TrEMBLK3Y9G71e-163K3Y9G7_SETIT; Uncharacterized protein
STRINGSi010859m1e-164(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.14e-36YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]