PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G193800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 442aa    MW: 46318.1 Da    PI: 7.6361
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G193800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19361395135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Sevir.7G193800.1.p 361 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 395
                         *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.8E-18355409IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018355391IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14358418No hitNo description
Gene3DG3DSA:3.30.50.102.1E-15359393IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.86E-15360417No hitNo description
PROSITE patternPS003440361386IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17361395IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MLHQTLIPSF FAPYVSASSS PPFLHASDAA TAPPAGSSVP VLLRGPAMPS LAHHHSPLDD  60
GRTDALKCNN SFAPEETAED AAAAAAAGAL VEKDGFSVED LLDLEEFGEP DKDGADNEEA  120
PLPPPPAAAA EEKSNGDSQP LSVVTYELPP PPPEMVDLPA HDVEELEWVS RIMDDSLSEL  180
PPQPHPPAAL VASLAARPPL AQQRRVPQPH VHDGAYRALP PAPGPLRTPT ICALSTEALV  240
PVKAKRSKRS RAPGWSLSGA SFLSDSASSS STTTTSSCSS SGSFSPFLFL DSAPFSSGLE  300
LAEGYYNHFL PAPASKKSKH GGGKGSKHKP KKRGRKPKHL PPNPSAAGAV ASQPAPGDRR  360
CSHCGVQKTP QWRAGPEGAK TLCNACGVRY KSGRLLPEYR PACSPTFVST IHSNSHRKVL  420
EMRRKKESGM VATAAPAVAS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G193800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9693520.0EU969352.1 Zea mays clone 329022 GATA zinc finger family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976389.10.0GATA transcription factor 6
TrEMBLK3Y7D50.0K3Y7D5_SETIT; Uncharacterized protein
STRINGSi010126m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.27e-40GATA transcription factor 5