PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G194700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29051.4 Da    PI: 5.7465
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G194700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.9e-1960113456
                         -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         +++ft+eq++ Le++F+  + ++  +e+ eLA++lgL+ rqV +WFqN+Ra+++
  Sevir.7G194700.1.p  60 KRRFTEEQIRSLESMFHAhQAKLEPREKVELARELGLQPRQVAIWFQNKRARWR 113
                         458**************989*********************************9 PP
2HD-ZIP_I/II122.22.5e-3958151193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                         e+krr+++eq+++LE++F++++ kLep++KvelareLglqprqva+WFqn+RAR+++kqlE+dy+aL++++dal+++ e L++e+ +L+++
  Sevir.7G194700.1.p  58 ERKRRFTEEQIRSLESMFHAHQaKLEPREKVELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRAKFDALHARVEFLKQEKLALTTQ 148
                         69*******************99******************************************************************99 PP

         HD-ZIP_I/II  91 lke 93 
                         l+e
  Sevir.7G194700.1.p 149 LHE 151
                         986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1944116IPR009057Homeodomain-like
SuperFamilySSF466891.21E-1847117IPR009057Homeodomain-like
PROSITE profilePS5007117.58954115IPR001356Homeobox domain
SMARTSM003892.2E-1957119IPR001356Homeobox domain
CDDcd000867.76E-1859116No hitNo description
PfamPF000461.1E-1660113IPR001356Homeobox domain
PRINTSPR000311.6E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000311.6E-695111IPR000047Helix-turn-helix motif
PfamPF021834.8E-13115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDRPDHHQHQ FYMPLPVQQQ QQQLCAPMMD EQASFLAARG GGGRGGSGGT VAGKGKGERK  60
RRFTEEQIRS LESMFHAHQA KLEPREKVEL ARELGLQPRQ VAIWFQNKRA RWRSKQLEHD  120
YAALRAKFDA LHARVEFLKQ EKLALTTQLH ELSERLRERE DRAGSGVAAT ASSSSCNGGG  180
VVGEEAEDDK RNVVLGCVDM EPPESCVLGG ACATPADVSV ESECDDHHHH LDYDDGFPES  240
FCATPELWEP WPLVEWNAVA *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G194700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282500.0KJ728250.1 Zea mays clone pUT6527 HB transcription factor (HB66) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976404.11e-163homeobox-leucine zipper protein HOX22
SwissprotQ01IK01e-98HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ51e-98HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLA0A368RX291e-162A0A368RX29_SETIT; Uncharacterized protein
STRINGSi010550m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.27e-33homeobox 7