PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G196100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Trihelix

Protein Properties

Length: 207aa MW: 22475.7 Da PI: 11.5074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G196100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.5	3.5e-08	21	82	1	66
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+la +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + ++ Sevir.7G196100.1.p 21 CWTTDETLAVARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82 8*******************************99865....689************998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.1E-6	20	83	No hit	No description
PROSITE profile	PS50090	5.993	22	74	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MASSSPSPPA PASGRRVPPP CWTTDETLAV ARAYTARRLA VGREHLTSAD WAAVAAAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP FFSKSQSRSP SLSPSPPPAV 120 SPPSPPSPPA SPPRKRRRDD AGDEDGLSDV VGALRAIGEG FLRAEERRME AAREAQRMRM 180 EMALRHLDAQ RRLMDALVGR IVDALE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	KLRRRLR
2	72	78	LRRRLRS
3	133	137	RKRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G196100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT066046	0.0	BT066046.2 Zea mays full-length cDNA clone ZM_BFb0189B18 mRNA, complete cds.
GenBank	DQ245467	0.0	DQ245467.1 Zea mays clone 15810 mRNA sequence.
GenBank	KJ727946	0.0	KJ727946.1 Zea mays clone pUT6044 trihelix transcription factor (THX31) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976415.1	1e-140	actin cytoskeleton-regulatory complex protein pan1
TrEMBL	A0A368RX47	1e-138	A0A368RX47_SETIT; Uncharacterized protein
STRING	GRMZM2G320827_P01	2e-94	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24

Link Out ? help Back to Top
Phytozome	Sevir.7G196100.1.p