PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G211600.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 273aa MW: 30655.3 Da PI: 10.1949

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G211600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.8	1.7e-26	203	252	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l ++++yF+lpi++A+k+L++++++LKr+CR+yGI+RWPhRkiksl Sevir.7G211600.3.p 203 DSITLVEIAQYFHLPIREASKTLKIGVSILKRKCRKYGIPRWPHRKIKSL 252 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.633	187	272	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	204	252	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDMDAAVSTL TALSIFASTV EHAAFRSVHG YRVIGRKDGK WVRWERWVER QFVLSLSVPP 60 CREVAVPAAS PRILMAGWRG RPVFREGQTV GTWRCIVAFD SVAAVKPSSP PPPVLSPLVN 120 PQLECLPNLY KDLQKVFQFQ KVEKVPRRVL RDAKEQPIHS GEQEKTSDEA DSSGSDSDGD 180 TQSDKELAPS VQKQPRANRK HIDSITLVEI AQYFHLPIRE ASKTLKIGVS ILKRKCRKYG 240 IPRWPHRKIK SLDSLIQDLE VNLTVHSISL HL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G211600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976506.1	0.0	protein RKD5
TrEMBL	K3Y9E5	0.0	K3Y9E5_SETIT; Uncharacterized protein
STRING	Si010837m	0.0	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-30	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.7G211600.3.p