PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G230000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 348aa    MW: 36969.7 Da    PI: 6.9522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G230000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1283134155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+++  A++++k+L+
  Sevir.7G230000.1.p  83 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRSDQASVVSGAIDFVKELE 134
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.63E-1381138No hitNo description
SuperFamilySSF474593.93E-1781152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11682133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-1083134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1483152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1088139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MTLEALCAPR SDVLVYDTFN AAAACAASAG SFLFGNAPAV EPSPAPAAQA PGAEGESRVQ  60
QQGRRKRRRR QRSVRNAEDA ENQRMTHIAV ERNRRRQMNE YLAVLRSLMP ESYVHRSDQA  120
SVVSGAIDFV KELEQQLQSL EAQKLALQQQ QRRDTAAAER DAAPTPARDP APAAEDAAAR  180
EAAAERPPFA RFFRYPQYSW RHAPPREDGA AAAAAVGAEE DASRASAVAD VEVGMVVDAH  240
ASLRVMAPRR PGQLLKLVAR MQALGLAVLH LNVTAALGGE LALYTLSLKV EEGCGLTTAE  300
DIAAAAHHVL CVIDAEAAAA AAAQRLLAPG AGQPEPLVGT NPPPLHR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16270GRRKRRRRQ
26369RRKRRRR
36468RKRRR
46471RKRRRRQR
58394RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G230000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976647.11e-179transcription factor bHLH96
TrEMBLK3Y8E31e-178K3Y8E3_SETIT; Uncharacterized protein
STRINGSi010485m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.12e-23beta HLH protein 71