PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G235200.2.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

G2-like

Protein Properties

Length: 226aa MW: 24981.6 Da PI: 8.4431

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G235200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	30	1.1e-09	1	20	36	55
G2-like 36 mkvkgLtlehvkSHLQkYRl 55 m++kgLtl+h+kSHLQkYRl Sevir.7G235200.2.p 1 MGMKGLTLYHLKSHLQKYRL 20 899****************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-8	1	21	IPR009057	Homeodomain-like
Pfam	PF14379	1.3E-21	64	110	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MGMKGLTLYH LKSHLQKYRL GKQGKKSTGL ELANGGGFAA PGLSFPTPTP IPGVPAEGKN 60 TGEMPLADAL RYQIQVQRKL QEQLEVQKKL QMRIEAQGKY LKAILEKAER NISSDVNAPS 120 DNIESTRSQL MDFNLALSGF MDNATRVCEE NNEQLVKALS DDKHKDNNLG FQLYQVGCQG 180 AKEVKWTPKT EDLLQLDLNI KGGYDLSSRG MQACEVDLKI NQQMI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G235200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976682.1	1e-165	myb family transcription factor PHL11
TrEMBL	K3Y9A2	1e-164	K3Y9A2_SETIT; Uncharacterized protein
STRING	Si010794m	1e-165	(Setaria italica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-25	G2-like family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G235200.2.p