PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G251300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 187aa    MW: 21350.2 Da    PI: 9.7442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G251300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.69.2e-182268455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Sevir.7G251300.1.p 22 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 68
                        59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.5E-201575IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-212194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.76E-182172No hitNo description
PfamPF000104.5E-152368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-182473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEDGGVPRRS TPPTRRSRSA EFHNFSERRR RDRINEKLKA LQELLPNCTK TDKVSMLDEA  60
IDYLKSLQLQ LQMLVMGKGM APVVPPELQQ YMHYITADPA HMPPLRPSGQ QPRPFQLTQA  120
NPQRQSNVES DFLSQMQNLH PSEPPQNFLR PPKLQLYTPE QRGGLASTSH NGGWIPERSS  180
SYNFME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12631ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G251300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9524830.0EU952483.1 Zea mays clone 1281977 protein SPATULA mRNA, complete cds.
GenBankKJ7277470.0KJ727747.1 Zea mays clone pUT5688 bHLH transcription factor (bHLH148) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684500.11e-136transcription factor PIF1
TrEMBLK3YC151e-134K3YC15_SETIT; Uncharacterized protein
STRINGSi011759m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.13e-27phytochrome interacting factor 3-like 5