PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G267200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bZIP

Protein Properties

Length: 402aa MW: 44896.1 Da PI: 6.8135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G267200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.4	4.8e-11	114	151	6	43
HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNk 43 + rr+++NReAAr+sR+RKka+i++Le+ +L + + Sevir.7G267200.1.p 114 VLRRLAQNREAARKSRLRKKAYIQQLETSRMKLAQLEQ 151 679************************86555554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-7	109	173	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.048	111	155	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.7E-8	113	152	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.24E-21	113	162	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.1E-8	115	158	No hit	No description
SuperFamily	SSF57959	1.13E-6	115	157	No hit	No description
PROSITE pattern	PS00036	0	116	131	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-29	199	274	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence Send to blast
MMELYHGYLE DHFNLHKLSI GSAASPPEFM TSASAVQFAA VPVRMGVYER PAPAPVMGMW 60 NSDPFKVDSG QATSGSTVME ADKKFDNRLE DVPQVALEPA RSTDQETSRP PERVLRRLAQ 120 NREAARKSRL RKKAYIQQLE TSRMKLAQLE QELQRARQQG AYANGNMGDS TLGFTGPMDP 180 GVAGFEIDYS NWVEEQNRHT AELRSALQGQ PSELELRTLV ETGLNNYEHL FRIKALAANA 240 DVFYVMSGMW KTPAERFFLW IGGFRPSEVL KILRPQLEPL TEPQLMAVGG LQHTSTQAED 300 ALSQGMEKLQ QNLAETLTAA ADPFGLPDGY MLQMATAVEK LKELVGFVTQ ADHLRQTTMQ 360 QMHKILTTRQ AARGLLALGD YFQRLRALSH LWATRREAAI S*

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence Send to blast

MMELYHGYLE DHFNLHKLSI GSAASPPEFM TSASAVQFAA VPVRMGVYER PAPAPVMGMW  60
NSDPFKVDSG QATSGSTVME ADKKFDNRLE DVPQVALEPA RSTDQETSRP PERVLRRLAQ  120
NREAARKSRL RKKAYIQQLE TSRMKLAQLE QELQRARQQG AYANGNMGDS TLGFTGPMDP  180
GVAGFEIDYS NWVEEQNRHT AELRSALQGQ PSELELRTLV ETGLNNYEHL FRIKALAANA  240
DVFYVMSGMW KTPAERFFLW IGGFRPSEVL KILRPQLEPL TEPQLMAVGG LQHTSTQAED  300
ALSQGMEKLQ QNLAETLTAA ADPFGLPDGY MLQMATAVEK LKELVGFVTQ ADHLRQTTMQ  360
QMHKILTTRQ AARGLLALGD YFQRLRALSH LWATRREAAI S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G267200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976974.1	0.0	transcription factor TGAL6 isoform X1
Refseq	XP_022683935.1	0.0	transcription factor TGAL6 isoform X1
Refseq	XP_022683936.1	0.0	transcription factor TGAL6 isoform X1
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A368RZR6	0.0	A0A368RZR6_SETIT; Uncharacterized protein
STRING	Si010177m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-129	TGACG motif-binding factor 4

Link Out ? help Back to Top
Phytozome	Sevir.7G267200.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]