PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G270100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 100aa    MW: 10821 Da    PI: 8.5371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G270100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.71.8e-0725661454
                        HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        d+i + +++L++llP+ ++++++ + s a +L+ ++ YI+sL
  Sevir.7G270100.1.p 25 DQISELLSKLQTLLPEsQTRNGAHRGSAARVLQDTCSYIRSL 66
                        6899************777999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.0511166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-82584IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-52566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-82570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MSSSRRSRTR RAGSSLSSSR SISEDQISEL LSKLQTLLPE SQTRNGAHRG SAARVLQDTC  60
SYIRSLHQEV DNLSETLAEL LSSADVTSDQ AAIIRSLLM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G270100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965981e-109FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977000.14e-47transcription factor ILI1
SwissprotA2XY478e-44ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7428e-44ILI1_ORYSJ; Transcription factor ILI1
TrEMBLK3YB308e-46K3YB30_SETIT; Uncharacterized protein
STRINGSi011424m1e-46(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-18bHLH family protein