PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G274600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WOX
Protein Properties Length: 229aa    MW: 25390.9 Da    PI: 9.5195
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G274600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2083142357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         +R++++++q+++Le l++   r+p+  ++e+++++l    +++ ++V++WFqN++a+e++
  Sevir.7G274600.1.p  83 TRWNPSPDQIKVLEMLYRGgMRTPNSFQIEQITEELgkygRIEGKNVFYWFQNHKARERQ 142
                         8*****************99**************************************97 PP
2Wus_type_Homeobox114.84.2e-3782144365
   Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         +tRW+P+p+Qik+Le+ly+ G+rtPn+ +i++it+eL +yG+ie+kNVfyWFQN+kaRerqkq
  Sevir.7G274600.1.p  82 TTRWNPSPDQIKVLEMLYRGGMRTPNSFQIEQITEELGKYGRIEGKNVFYWFQNHKARERQKQ 144
                         69***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.89678143IPR001356Homeobox domain
SuperFamilySSF466896.84E-1380148IPR009057Homeodomain-like
SMARTSM003891.9E-780147IPR001356Homeobox domain
CDDcd000861.52E-583144No hitNo description
PfamPF000461.1E-1783142IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.9E-883142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MRLHHFHVAY LDKAASPSSS PPSISQSLSS SAIPLALQCL RPLAPKISFP EARKMVVLPE  60
FSRVRNASRL LNCTVQVPTG GTTRWNPSPD QIKVLEMLYR GGMRTPNSFQ IEQITEELGK  120
YGRIEGKNVF YWFQNHKARE RQKQKRAALL TLSTTSSLPS PETKVGVGKE EEASCEDASS  180
RKRRCRTWGD DVHGDAAPAT EVVADCTDDV TLELFPLRPD QGKSKLIN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G274600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851951e-105BT085195.1 Zea mays full-length cDNA clone ZM_BFb0326G17 mRNA, complete cds.
GenBankEU9642751e-105EU964275.1 Zea mays clone 277479 WUSCHEL-related homeobox 4 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977039.11e-171WUSCHEL-related homeobox 4
SwissprotQ25AM21e-93WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV31e-93WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLK3YDC51e-169K3YDC5_SETIT; Uncharacterized protein
STRINGSi012229m1e-170(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-38WUSCHEL related homeobox 4