PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G277400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 251aa    MW: 27169.5 Da    PI: 7.0864
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G277400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.5e-171171822283
                         H.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  22 faeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         +ae+h    + + + ++ l +ed   g++W+++++y+ +s++yvlt+GW+ Fv+++gL +gD+v F+
  Sevir.7G277400.1.p 117 HAEKHfpplD-EAAPPVLLAFEDvAGGKVWRFRYSYWSSSQSYVLTRGWSCFVREKGLVAGDTVAFS 182
                         4666666531.3345678999996677***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.4663287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-53260IPR001471AP2/ERF domain
PROSITE profilePS5086311.025101203IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-22103184IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-19104183IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-11106181No hitNo description
SMARTSM010191.2E-8107193IPR003340B3 DNA binding domain
PfamPF023624.0E-14130182IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSTSTQEVEQ LDWMDGDDDA AAASPRAQSS SRYKGVVPQP NARWGAQIYE RHARVWLGTM  60
AFLAARPKAE VVDMLRKHTY DDELRQALRS GGGGDHALAL VPRVALFEKA VTPSDLHAEK  120
HFPPLDEAAP PVLLAFEDVA GGKVWRFRYS YWSSSQSYVL TRGWSCFVRE KGLVAGDTVA  180
FSQAQAAVSS STDDGEVDVK RRMFIECRKR KRNDGGAGHG DDCCADGGAR VVRLFGANIA  240
AAAIGASCMC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-2810518512104DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199211KRRMFIECRKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G277400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0958122e-31FP095812.1 Phyllostachys edulis cDNA clone: bphyem125h21, full insert sequence.
GenBankFP0968352e-31FP096835.1 Phyllostachys edulis cDNA clone: bphyem207b07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806570.11e-124AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS75e-66Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLA0A368S0081e-151A0A368S008_SETIT; Uncharacterized protein
STRINGSi012228m1e-142(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.16e-52related to ABI3/VP1 1