PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G295400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 209aa    MW: 22153.7 Da    PI: 7.8078
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G295400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd++lv ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Sevir.7G295400.1.p 14 KGAWTKEEDQRLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                        79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.112965IPR017930Myb domain
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
SuperFamilySSF466896.97E-231588IPR009057Homeodomain-like
CDDcd001675.73E-121661No hitNo description
PROSITE profilePS500904.82162104IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-1165103IPR009057Homeodomain-like
SMARTSM007171766115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDQRLVAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDDLIIK LHQILGNNVT AAAAAAPSSR PEDQPAARSS CSPETSGASN  120
SSDEESGASV PFRCSIDLNL CISQPSQQPS LPSTSSPPAR KQETEATSSA TAVDASSRSY  180
SDGKKICLCL NRLGLQGGEG CTCGHGGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-17139726109MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G295400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569051e-116AM156905.1 Zea mays mRNA for transcription factor MYB8 (myb8 gene).
GenBankEU9639111e-116EU963911.1 Zea mays clone 274019 hypothetical protein mRNA, complete cds.
GenBankHQ8586921e-116HQ858692.1 Zea mays clone UT1148 ZmMYB8 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977235.11e-127myb-related protein Zm38
TrEMBLK3YEC21e-125K3YEC2_SETIT; Uncharacterized protein
STRINGSi012585m1e-126(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-58myb domain protein 4