PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.7G298200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

TCP

Protein Properties

Length: 416aa MW: 42117 Da PI: 6.3596

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.7G298200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	129.9	2.6e-40	105	216	3	113
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ + + s +s a++ + Sevir.7G298200.1.p 105 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-Npsra 194 789*****************************************************************66632222222222222.12322 PP TCP 89 ..........kaaksaakskksqksaasalnlake 113 + +++aa ++++ Sevir.7G298200.1.p 195 spfpalalhpH-----------HHQAA--AAPHDM 216 33333322220...........22222..222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.31	110	164	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.4E-36	110	247	IPR005333	Transcription factor, TCP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MDHGGGGGGG GGGGGAPSSS NSGGATASAG CASGGRGGDH HPFYYTGPAA SNSGVPQPPP 60 QQQPSPFAGA LAITPVPEQA QPSSAAGADK KALVPVAAPA AGPVVAKRPS KDRHTKVDGR 120 GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA ILAATGTGTI PANYSSLNIS 180 IRSGAAAAAN PSRASPFPAL ALHPHHHQAA AAPHDMSAMM GYHHHLLPPQ QQDPSAGDAY 240 MRKRYREDLF KEDDDRQDPS APKAREQQAA ATPPPPSAAM WAVGPNAAAP SGGFWMLPVS 300 ASSAAAARPT EQPMWSFSGG GGGTGTVQAP LQFMSRASYP STAAAGGGGG GMADTNIGML 360 AALNAYNRGG SEEQQQHQQP EGEQQHGGDG GGNDEEDDDD SGEENHGNNS SHCWG*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MDHGGGGGGG GGGGGAPSSS NSGGATASAG CASGGRGGDH HPFYYTGPAA SNSGVPQPPP  60
QQQPSPFAGA LAITPVPEQA QPSSAAGADK KALVPVAAPA AGPVVAKRPS KDRHTKVDGR  120
GRRIRMPALC AARVFQLTRE LGHKSDGETI EWLLQQAEPA ILAATGTGTI PANYSSLNIS  180
IRSGAAAAAN PSRASPFPAL ALHPHHHQAA AAPHDMSAMM GYHHHLLPPQ QQDPSAGDAY  240
MRKRYREDLF KEDDDRQDPS APKAREQQAA ATPPPPSAAM WAVGPNAAAP SGGFWMLPVS  300
ASSAAAARPT EQPMWSFSGG GGGTGTVQAP LQFMSRASYP STAAAGGGGG GMADTNIGML  360
AALNAYNRGG SEEQQQHQQP EGEQQHGGDG GGNDEEDDDD SGEENHGNNS SHCWG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.7G298200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004977266.1	0.0	transcription factor PCF3
Swissprot	Q53PH2	2e-71	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	A0A368S0S6	0.0	A0A368S0S6_SETIT; Uncharacterized protein (Fragment)
STRING	Si010765m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	5e-43	TCP family protein

Link Out ? help Back to Top
Phytozome	Sevir.7G298200.1.p