PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G302600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 440aa    MW: 47436.1 Da    PI: 10.1905
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G302600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.88.4e-15123154132
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                         C +Cg+ +Tp+WR+gp g+ tLCnaCG++ + 
  Sevir.7G302600.1.p 123 CLQCGAVETPQWRSGPMGSGTLCNACGVRLKA 154
                         89**************************9986 PP
2GATA51.51.4e-16258292135
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                         C +Cg+++Tp+WR+gp g +tLCnaCG++yr  +l
  Sevir.7G302600.1.p 258 CLHCGSSSTPQWREGPMGRSTLCNACGVRYRQGRL 292
                         99*****************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577168.08E-13117164No hitNo description
PROSITE profilePS5011413.573117171IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-11117167IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.6E-14121160IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.87E-10122165No hitNo description
PfamPF003202.4E-12123154IPR000679Zinc finger, GATA-type
PROSITE patternPS003440123148IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-13252311No hitNo description
SMARTSM004013.6E-15252306IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.637252288IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-14256290IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.01E-13257313No hitNo description
PfamPF003202.2E-14258292IPR000679Zinc finger, GATA-type
PROSITE patternPS003440258283IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MAGGAGEGER EGPLGYVLSL PAASLPLPVA VSCLDATVPR KARSRLRLRV QPCVWWAFKL  60
PVPAPEEAKG PAPPASMATN PTEEARSPRP QRLRVRHGPP PSPDDPHTPS PAMERPAKRA  120
RRCLQCGAVE TPQWRSGPMG SGTLCNACGV RLKAAGALRE QVHRPPPASA RTVAEPPPES  180
PVSDSSPDGP IWEPGSVPDV YLLRKKPPKQ GKPPPPRMEP ASPPAPAPAV YLLKKKKKKP  240
PKASKKKPWR PRKSSKRCLH CGSSSTPQWR EGPMGRSTLC NACGVRYRQG RLLPEYRPLA  300
SPSFEPSEHA NRHSQVLQLH RQRKGQKNQP PLPTEQPRLM DDLTGALACS GDGDDPMNVL  360
LPRRWHDKDE YPRTPLHQPL PQPEDSLPGD PRVGGIDATA QGRGGRGNDP NGAPSSLDSL  420
LLEGPSAPLI DDGDESLIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232239LKKKKKKP
2233247KKKKKKPPKASKKKP
3234246KKKKKPPKASKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G302600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977277.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X1
RefseqXP_004977278.10.0ras-associated and pleckstrin homology domains-containing protein 1 isoform X2
TrEMBLA0A368S0V10.0A0A368S0V1_SETIT; Uncharacterized protein
STRINGSi010130m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.13e-26GATA transcription factor 4