PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.7G309900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family B3
Protein Properties Length: 267aa    MW: 29195.7 Da    PI: 8.6929
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.7G309900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B392.33.5e-2937133186
                         EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                         f+k ltpsdv+k++rlv+pk++ae++           g  +e++  l +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v
  Sevir.7G309900.1.p  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplggaggvasGDGSEKGLLLAFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVV 127
                         99********************************99955556888********************************************** PP

                         EEEE-S CS
                  B3  81 vFkldg 86 
                          F++++
  Sevir.7G309900.1.p 128 RFERVR 133
                         ***663 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-3930156IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-2934135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.21E-2735135No hitNo description
PROSITE profilePS5086313.19737149IPR003340B3 DNA binding domain
PfamPF023628.6E-2737134IPR003340B3 DNA binding domain
SMARTSM010198.1E-2337149IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MATHHLAQGH PQAWPWGVAM YTNLHYHQQQ YEREHLFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLGGAGG VASGDGSEKG LLLAFEDEAG KPWRFRYSYW TSSQSYVLTK GWSRYVKEKR  120
LDAGDVVRFE RVRGGLGAGD RLFIGCRRRG ESAAPAPTPP PPVRAPAPAL NPGEQQPWSP  180
MCYSTSGSSY PTSPASPYAY HSDMAHAGEA DAKSSGTPTA PSRKLRLFGV NLDCGPEPEP  240
EAAMYGYMHQ SPYAAVSTVP NYWGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-51321493113B3 domain-containing transcription factor NGA1
5os9_B2e-51321493113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.7G309900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977350.10.0B3 domain-containing protein Os11g0156000
SwissprotQ53QI01e-119Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLK3Y9F70.0K3Y9F7_SETIT; Uncharacterized protein
STRINGSi010849m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.17e-55B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]