PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G005300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 416aa    MW: 46070.5 Da    PI: 4.8167
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G005300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1680140155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +    ++  k ++++lg ++t+e Aa+a++ a++k++g
  Sevir.8G005300.1.p  80 SVYRGVTRHRWTGRFEAHLWDkHCLtsiQNkkKGRQVYLGAYDTEEAAARAYDLAALKYWG 140
                         78*******************9988888445455*************************98 PP
2AP2574.8e-18183235156
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg+f+t eeAaka++ a+ +++g+
  Sevir.8G005300.1.p 183 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 235
                         89****99**********99966...3.6*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-1480140IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-1780149IPR016177DNA-binding domain
CDDcd000186.36E-1280149No hitNo description
Gene3DG3DSA:3.30.730.101.8E-1781149IPR001471AP2/ERF domain
PROSITE profilePS5103220.8981148IPR001471AP2/ERF domain
SMARTSM003802.5E-2881154IPR001471AP2/ERF domain
PRINTSPR003673.3E-68293IPR001471AP2/ERF domain
PfamPF008471.6E-13183234IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-18183244IPR016177DNA-binding domain
CDDcd000184.70E-26183244No hitNo description
PROSITE profilePS5103219.032184242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-19184242IPR001471AP2/ERF domain
SMARTSM003803.2E-26184248IPR001471AP2/ERF domain
PRINTSPR003673.3E-6224244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MERSPRPSPP PVSSPPSSSA SSSISTEDTP IPPRRKRART TQAKGAAPDK PKRPRKEAAR  60
HRHSKEDPNA TAASAGKRSS VYRGVTRHRW TGRFEAHLWD KHCLTSIQNK KKGRQVYLGA  120
YDTEEAAARA YDLAALKYWG PETVLNFPAE DYSNEMSEME GVSREEYLAS LRRRSSGFSR  180
GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTFDTQEE AAKAYDLAAI EYRGANAVTN  240
FDISCYLDHP XLLAQLQQDP QVVPALNQEP QPDQSETTVQ ESDSSEEKTP DNNAEPXDNA  300
EPDANAEPXN NAEPLTVDDS IEESLWSPCM DYELDTMSRS NFGSSINLNE WFTDADLDSN  360
IGCLFDGCSX VDEGSKDGVG LADFSLFEEG DGKLKDVISD IEEGIHPPTM ISVCN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15056PKRPRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G005300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0381840.0BT038184.1 Zea mays full-length cDNA clone ZM_BFb0216H15 mRNA, complete cds.
GenBankKJ7269100.0KJ726910.1 Zea mays clone pUT3455 AP2-EREBP transcription factor (EREB85) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978469.10.0AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A368S2U20.0A0A368S2U2_SETIT; Uncharacterized protein
STRINGSi026433m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-79AP2 family protein