PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G007500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 367aa    MW: 40815.4 Da    PI: 6.3107
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G007500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51111381128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lp+GfrFhPtdeel+v+yL +++++ ++++  +i+ev+iy+++PwdLp+k   +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+
  Sevir.8G007500.1.p  11 LPAGFRFHPTDEELIVHYLMNQASSLPCPV-PIIAEVNIYQCNPWDLPAKSLFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKA 100
                         799***************************.88***************7777799************************************ PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +ls+ ++e++g+kk Lvfy g+ pkg+ktdW+mheyrl
  Sevir.8G007500.1.p 101 ILSTpTSENIGVKKALVFYGGKPPKGTKTDWIMHEYRL 138
                         **9989999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.27E-636165IPR003441NAC domain
PROSITE profilePS5100559.18911165IPR003441NAC domain
PfamPF023655.4E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MPIASSRLPN LPAGFRFHPT DEELIVHYLM NQASSLPCPV PIIAEVNIYQ CNPWDLPAKS  60
LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKA ILSTPTSENI GVKKALVFYG  120
GKPPKGTKTD WIMHEYRLTG ANKGTKRRGS SMRLDDWVLC RIYKKSNNFQ FSDQDQEGST  180
VEEESLNNNM NSTSAASPNK SDANDHDDQF QFQPTTMSMS KSYSITDLLN TIDYSALSQL  240
LDAPAEAEPP LIYPTTTQTH QSLNYNNNVM NNNSHFNLPE AADACPDYVA PNNCNGLKRK  300
RVMTMDGAES SFDDGSRKLL KLPSDSRSSG HGHFVGSTSS YCNQQLVDTS GFQYSSLLSY  360
PFIEMQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-721017014173Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G007500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6735450.0JN673545.1 Panicum virgatum cultivar Summer VS16 NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978485.10.0NAC transcription factor 29
TrEMBLK3ZIX70.0K3ZIX7_SETIT; Uncharacterized protein
STRINGSi026530m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38033775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-85NAC-like, activated by AP3/PI