PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G012000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 109aa    MW: 12228.6 Da    PI: 9.3933
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G012000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY61.12e-1956100243
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae 43 
                         dDgy+WrKYG K+++g+ ++rsY+rCt++   gC ++k+v+++++
  Sevir.8G012000.1.p  56 DDGYEWRKYGEKKINGTSYTRSYFRCTYKddtGCLATKHVQQKDS 100
                         8***************************99999*******98764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081117.15550100IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-1850100IPR003657WRKY domain
SuperFamilySSF1182901.7E-1750101IPR003657WRKY domain
SMARTSM007747.8E-2055108IPR003657WRKY domain
PfamPF031065.8E-1956103IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MIVKAEPQLS PPSPAFADSQ ATATTITARR AKKRRSSAME GQKSSWVDFT NVPYEDDGYE  60
WRKYGEKKIN GTSYTRSYFR CTYKDDTGCL ATKHVQQKDS SDPPSHLQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G012000.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978526.12e-50probable WRKY transcription factor 54
TrEMBLK3ZJB74e-49K3ZJB7_SETIT; Uncharacterized protein
STRINGSi026670m7e-50(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.16e-14WRKY DNA-binding protein 30