PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G021900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

LBD

Protein Properties

Length: 207aa MW: 22154.2 Da PI: 7.7214

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G021900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.7e-45	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+C+++Cv+apyfp e+p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lqqq++ql+ Sevir.8G021900.1.p 16 PCASCKLLRRRCTQECVFAPYFPPEDPHKFAIVHKVFGASNVSKMLQELPAQQRADAVSSLVYEANARMRDPVYGCVGAISYLQQQVSQLQ 106 7**************************************************************************************** PP DUF260 92 aelallkee 100 +lal+k+e Sevir.8G021900.1.p 107 MQLALAKAE 115 ***9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1820	3.3E-4	5	144	IPR029058	Alpha/Beta hydrolase fold
PROSITE profile	PS50891	26.851	15	116	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-44	16	113	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MAGSGSSSGS GSSSSPCASC KLLRRRCTQE CVFAPYFPPE DPHKFAIVHK VFGASNVSKM 60 LQELPAQQRA DAVSSLVYEA NARMRDPVYG CVGAISYLQQ QVSQLQMQLA LAKAEILCVQ 120 MQHDGHATVS SPPSAASQQL ERKQQQLMDC EAYGSLLMQN GLMNTSFNST AAAHQQQQML 180 AGSLGSAGNT AMMLQEACLK KESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-49	6	117	4	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-49	6	117	4	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G021900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661028.1	1e-130	LOB domain-containing protein 12
Swissprot	Q8LBW3	1e-69	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	K3YBQ3	1e-133	K3YBQ3_SETIT; Uncharacterized protein
STRING	Si011647m	1e-134	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	4e-59	LBD family protein

Link Out ? help Back to Top
Phytozome	Sevir.8G021900.1.p

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]