PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G055200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 217aa    MW: 23777.8 Da    PI: 9.0878
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G055200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM691.3e-21111502128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratk.......sgyWk 84 
                         pp ++F+Ptde++v +yL +++ g +++ ++++ + d +++ Pw+L  ++ +a++++ +fF + + ++ +g r+ r+++        g W+
  Sevir.8G055200.1.p  11 PPAYKFDPTDEDIVAHYLLPRAIGFPNPYAHAVIDDDPCSCPPWELLrRHGHAGSDHAFFFGPPSDRAVNGVRACRVVRpgpeggaGGLWR 101
                         899***********************9998999999**********734555566799******************8555555555899*9 PP

                 NAM  85 atgk.dkevlsk......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                              + ++++       + +l   ++ L++y+  +p+  ++ Wvmhey+l
  Sevir.8G055200.1.p 102 GHDAkEADLVVVrrgggaQLQLRYRRRNLAYYHDGDPN--SSGWVMHEYQL 150
                         54431333333235765555558999******777777..8********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-306165IPR003441NAC domain
PROSITE profilePS5100525.64610167IPR003441NAC domain
PfamPF023655.8E-1511150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEASRFGFDF PPAYKFDPTD EDIVAHYLLP RAIGFPNPYA HAVIDDDPCS CPPWELLRRH  60
GHAGSDHAFF FGPPSDRAVN GVRACRVVRP GPEGGAGGLW RGHDAKEADL VVVRRGGGAQ  120
LQLRYRRRNL AYYHDGDPNS SGWVMHEYQL LHPKLLPGPV LLRIRITAKA KKKQQLATRA  180
KKQQHAAAAD QQPIPGPEQP GPSNYPGDAP SPEISS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167173AKAKKKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G055200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980219.11e-157NAC domain-containing protein 18
TrEMBLK3ZML81e-154K3ZML8_SETIT; Uncharacterized protein
STRINGSi027836m1e-155(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143011926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.15e-13NAC domain containing protein 58