PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G059300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 177aa MW: 19190.2 Da PI: 5.3199

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G059300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	17	36	5	24
HHHHHHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLr 24 ++e+ErrRR++++ ++L Sevir.8G059300.1.p 17 AKEIERRRRQQMKALCARLA 36 589**********9999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.638	12	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.18E-6	17	80	No hit	No description
SuperFamily	SSF47459	6.02E-8	18	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	18	88	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MLVGAAAATT YGDGGGAKEI ERRRRQQMKA LCARLASRRL LIFIFPDNNY MVVCMQVKMN 60 QFDILDAVVS YIKELKEMVE QLEQQRSSAA KPGGVGSEEA PTEEMAVAPV VLALLQPQDG 120 SILDVAVICS VRQSLILHEV ITVLEEEGAE RLYGLNCSHR LIGRLCNLGG LDGSRG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G059300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828761.1	6e-27	protein IRON-RELATED TRANSCRIPTION FACTOR 2-like
TrEMBL	A0A3L6P9K1	8e-31	A0A3L6P9K1_PANMI; Uncharacterized protein
STRING	Sb03g008570.1	8e-26	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Link Out ? help Back to Top
Phytozome	Sevir.8G059300.1.p