PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G064300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 466aa    MW: 48701.8 Da    PI: 8.2609
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G064300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17365397133
                GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                         Cs+C++ +Tp+WR gpdg+ tLCnaCG++y+ +
  Sevir.8G064300.1.p 365 CSHCHSPDTPQWRAGPDGPGTLCNACGIRYAAN 397
                         ******************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.596359397IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16359413IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-14361422No hitNo description
Gene3DG3DSA:3.30.50.104.5E-14363399IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.91E-14364420No hitNo description
PROSITE patternPS003440365390IPR000679Zinc finger, GATA-type
PfamPF003201.9E-15365398IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MRTQSHLSLL DVPDDLPDCD GGCFRPGGGL CCPDDPLDLV LQLFPAAAPA PHEVSLTALG  60
IGGSPRRQDQ PPPFGWAQEN GFGDVTVLGA GSAPGGGGVW ERDSCGLSGR VPEHMEPLDV  120
DKYLVDHAPD DGGGGGGGEV TVCNASRDTR GMPASGVRAC GALGGVVSNY APPLLAPMSA  180
GALHPYACRA FDGVVSNGAP PLPAPMPAGD GLHACGAQRG AVSNDAPPMP AGALHACRAL  240
VHVVSDDAPP LRAHAPPSAR SLPASRTSSG SLTPTTSETS SPAPVWRPLA WPVPKKRRRP  300
PVKCRKRPWS LDFPLHAVPV APPDNPGDSN GNGDARNSFD NAGGGGIRRR RPVPRQRNRQ  360
AQRVCSHCHS PDTPQWRAGP DGPGTLCNAC GIRYAANKLL PEYRPSTAPS FRSDQHSNRH  420
RKVVKLREQK AKETLKAMPD AVPVSPKSSW MHVDTHQQAC DIPSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293299PKKRRRP
2294307KKRRRPPVKCRKRP
3348355RRRPVPRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G064300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S5260.0A0A368S526_SETIT; Uncharacterized protein
STRINGSi028169m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16076913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.17e-26GATA transcription factor 4