PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G080300.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 256aa MW: 27002.3 Da PI: 11.7221

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G080300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	46.1	1.7e-14	37	108	1	70
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkk 70 kfY +YA +vGF+vrksks++s + + +++r+f s++g +++++ +++rr ra++r C a+++v++ Sevir.8G080300.1.p 37 KFYLAYAARVGFRVRKSKSSTSGHGDAVIMRRFAFSRQGLPARKDPPldPSRKRRDRASSRAACPAMIQVNR 108 6************************************9999887666899999*************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-12	37	108	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MSADASDVAL SECGATAAEA RAPAVGMVFP SPAAALKFYL AYAARVGFRV RKSKSSTSGH 60 GDAVIMRRFA FSRQGLPARK DPPLDPSRKR RDRASSRAAC PAMIQVNRLH ALGSSPAASS 120 ITPTGSAAMT TTTTAATLTP AVQRVQTRQP SIPVTSHQRC HLAGLLIQMP IPSRALLLDP 180 TAMSPSACLS ISRRSSLRIP HSATPSRLIA ATVLPISYGR MHAPDCCING LGMRLCLTSP 240 ARGTCLLRHS WHKLD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G080300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP25380	3	3

Link Out ? help Back to Top
Phytozome	Sevir.8G080300.1.p