PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.8G080900.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

bHLH

Protein Properties

Length: 259aa MW: 28551.1 Da PI: 6.5146

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.8G080900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	95	141	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + L +++P + +K +K++iL +++Y+k+L+ Sevir.8G080900.1.p 95 EHVAAERKRREKMQQQSVALATMVPDL-----TKTDKISILGSTIQYVKQLE 141 699*********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.29E-14	83	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.935	91	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-16	95	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-8	95	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-8	96	145	No hit	No description
SMART	SM00353	2.0E-10	97	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MDEPNQRNSE SQPEPDRDEL PYMYQQEEHA GMQQLYQDPR HPSTLAMTGL QRFGSAPALP 60 NLSFGSPHAQ LHVAVEGVPL EPPERRSRSQ LSTAEHVAAE RKRREKMQQQ SVALATMVPD 120 LTKTDKISIL GSTIQYVKQL EEKVKTLEEQ NARRTSSESS TVFEGKGHIS STDKQHTSCP 180 SGSAESVGGD SNSSVEVTIH ENTVLLKICC ERRSGVLVMI ISKLESLGLS IMNTSVLPFT 240 NTYFSISITA KARIPYPN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	99	104	ERKRRE
2	100	105	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.8G080900.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025828601.1	1e-114	transcription factor bHLH18-like
TrEMBL	A0A3L6PFU5	1e-119	A0A3L6PFU5_PANMI; Transcription factor bHLH18-like
STRING	Pavir.Hb01590.1.p	1e-112	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-27	bHLH family protein

Link Out ? help Back to Top
Phytozome	Sevir.8G080900.1.p