PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G083000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 197aa    MW: 21041.7 Da    PI: 4.6047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G083000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91e-171968255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a++ l+g
  Sevir.8G083000.1.p 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALHLRG 68
                        69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-311977IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-221977IPR016177DNA-binding domain
CDDcd000186.17E-301978No hitNo description
PROSITE profilePS5103223.1431976IPR001471AP2/ERF domain
SMARTSM003804.3E-371982IPR001471AP2/ERF domain
PfamPF008473.5E-112068IPR001471AP2/ERF domain
PRINTSPR003674.1E-122031IPR001471AP2/ERF domain
PRINTSPR003674.1E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEVVIDNAAG VAAGDVAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD  60
VAALHLRGRE ARLNFPALVH HFRRPATAEP DDIRAAALEA AAQVRFRPDL VMLAGGGGGG  120
GDGDSCGSAG SPDLLLGDDV AWDVLLGTDE LAPESPKMWA ELAEAMLMAP PVWEGNAADN  180
DEWAQGNLWD LPVWHC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-161980567ATERF1
3gcc_A3e-161980567ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G083000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979006.11e-138ethylene-responsive transcription factor ERF024
TrEMBLK3ZJX71e-137K3ZJX7_SETIT; Uncharacterized protein
STRINGSi026882m1e-138(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-28ERF family protein