PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G089900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 183aa    MW: 20050.6 Da    PI: 10.5295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G089900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY46.86.1e-1543782359
                        EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                         YY+Ct++gC ++kk+ers  d +++ei Y+g+Hnh 
  Sevir.8G089900.1.p 43 DYYKCTFPGCFARKKLERSL-DCQIMEIAYKGRHNHA 78
                        6*******************.***************6 PP
2WRKY92.33.7e-29123179258
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                         dDg++WrKYGqK+ kg+++prsY++C++ gCp++k+ver+++d++ +++tYe++Hn 
  Sevir.8G089900.1.p 123 DDGCRWRKYGQKVLKGNPNPRSYFKCSMFGCPARKHVERASHDQRSFVTTYESKHNT 179
                         8******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081112.1862780IPR003657WRKY domain
SMARTSM007742.8E-63879IPR003657WRKY domain
SuperFamilySSF1182903.14E-104280IPR003657WRKY domain
PfamPF031061.9E-84377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-114380IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-30113179IPR003657WRKY domain
SuperFamilySSF1182907.98E-26115179IPR003657WRKY domain
PROSITE profilePS5081130.435117182IPR003657WRKY domain
SMARTSM007742.0E-32122181IPR003657WRKY domain
PfamPF031065.0E-24123178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGGWVARAAC GGTSGRMGVR GWRAVGWASA RQGPRHAAGD GPDYYKCTFP GCFARKKLER  60
SLDCQIMEIA YKGRHNHARP RNTSRGSAGT AVQVLQSGGG NASERRFGEM PAMSTVSDTE  120
VIDDGCRWRK YGQKVLKGNP NPRSYFKCSM FGCPARKHVE RASHDQRSFV TTYESKHNTT  180
TI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-26113178873Probable WRKY transcription factor 4
2lex_A8e-26113178873Probable WRKY transcription factor 4
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G089900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703602.11e-107WRKY transcription factor WRKY24-like
SwissprotQ6B6R49e-44WRK24_ORYSI; WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-43WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A368S5R91e-106A0A368S5R9_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP5970322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.22e-45WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]