PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G090500.7.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CAMTA
Protein Properties Length: 226aa    MW: 26140.2 Da    PI: 7.2192
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G090500.7.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1505.9e-1624079117
                CG-1  79 evlycyYahseenptfqrrcywlLeeelekivlvhylev 117
                         e+l+cyYa++++nptfqrr+yw+L+ ++e+ivl hy++v
  Sevir.8G090500.7.p   2 EALNCYYARGDKNPTFQRRIYWMLDPAYEHIVLLHYRDV 40 
                         89***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143730.804146IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-12240IPR005559CG-1 DNA-binding domain
SMARTSM000153.7178200IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525408.76E-6178224IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.11180199IPR000048IQ motif, EF-hand binding site
SMARTSM000151.9201223IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.498202225IPR000048IQ motif, EF-hand binding site
PfamPF006120.0036203222IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEALNCYYAR GDKNPTFQRR IYWMLDPAYE HIVLLHYRDV PEGSSFSETA RNDSFTLNQN  60
SSTPTRAELC SSSGWTSETP LPFPRSAYEV SPRTANINNE RKSTSGSHLI QHKKIFEKQL  120
SLEDQEDSDV TDKEVENLPD DIFNELEFSR DHTKETGTQP CHNSCLSIHE AFAVSHGVLE  180
KSALSIQKNF RCWKRQKEFL KLRKYAIKIQ AQVRANQERK KYMEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G090500.7.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816190.15e-55calmodulin-binding transcription activator 4-like isoform X1
RefseqXP_025816192.14e-55calmodulin-binding transcription activator 4-like isoform X2
TrEMBLA0A3L6SKI17e-55A0A3L6SKI1_PANMI; Calmodulin-binding transcription activator 4-like
STRINGPavir.Ea03904.1.p3e-55(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-21Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains