PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G096700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 696aa    MW: 72387.5 Da    PI: 7.7193
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G096700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044378400123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C dCg++F ++  L  H + H
  Sevir.8G096700.1.p 378 YSCADCGETFYTPQALGGHANGH 400
                         99***********9998887766 PP
2zf-C2H212.60.00041424447123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         ++Cp C+ +Fs+   L  H ++ H
  Sevir.8G096700.1.p 424 HVCPVCDIVFSTGQALGWHRKRvH 447
                         79*******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035576139159IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.68E-6376444No hitNo description
PfamPF139120.03378401IPR007087Zinc finger, C2H2
SMARTSM003555.1378400IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325378405IPR007087Zinc finger, C2H2
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
PfamPF139121.3E-8423448IPR007087Zinc finger, C2H2
SMARTSM003550.052424447IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280426447IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MSPSEEPPPP PPPPPPPPPP KGESMGRRLI VRIRLRTMQL PDQEEGSVVG ANENAAALQS  60
YGSESPRSPH EKLPERPHEG EASRSRGVEP PSEPLAGGHG REEAAVQQHG SPSLCSREAY  120
CLIRDAARAG LGVVAAEPYL CTNCTMTFGR EKKMQGHKRS GRSSQVAGHG VPAPGDSSRC  180
GRQGGPRVLA HPPGGPRVWG AQRRPRQPSY RPRSRESRAI EDDDSDNDNA MNVTGGDAGN  240
ANPVIAVMGF GPTASSAPDV APVLPMARAP AAATEVIVID DDSSDDDNVV NGTNAAAVLP  300
LPRAPAAPTA ADTVKGKNAL HEGGACYSNG GHGKAVAGYS SAGHSKAAAG YSSGGYGYGY  360
GKAIAIGGQS KRGPRRPYSC ADCGETFYTP QALGGHANGH RSKEKKSMVM PNLQSPSACR  420
SGRHVCPVCD IVFSTGQALG WHRKRVHYGG LVIGSASNTS SSSTPRPPAN ALEPSEATAM  480
NSNAAAVHGT ANAMRCRSFF PDSAGSAILA LPALNPVQRM AMTSNPAVPG LVSAATAATG  540
SWSWSLPATT SSFLPAIPLQ NHGENPPEEI AVAPGNRAGR TIRAFSSQDQ EENPPQELAM  600
APGNGEHRSI RPFGSDTSPQ FPSQNQEYPP EERAVATGND EQRSICLLGI DVSPALPSQN  660
QEENPPQEIV PGNRGLGTIL LFGVNLAEGP KEPKK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G096700.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A368S7M20.0A0A368S7M2_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1867479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.14e-10zinc-finger protein 3