PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G100600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 224aa    MW: 23507.7 Da    PI: 11.3461
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G100600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1657106355
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GV+ ++ +g+++AeIrd    + k +r++lg+f+t+e Aa a+++a+ + +g
  Sevir.8G100600.1.p  57 FIGVSKRP-WGKFAAEIRDsT--R-KGARVWLGTFDTPEAAALAYDQAAFSARG 106
                         67******.**********32..2.24***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.95656114IPR001471AP2/ERF domain
SMARTSM003806.2E-2956120IPR001471AP2/ERF domain
PfamPF008474.5E-1257106IPR001471AP2/ERF domain
PRINTSPR003671.0E-75768IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-2757115IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2057116IPR016177DNA-binding domain
PRINTSPR003671.0E-78096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MFLGLAGGRN AGGDMLSRVG EASSASSSDV EMVSATMSSE QLWQKASTAV KRRPESFIGV  60
SKRPWGKFAA EIRDSTRKGA RVWLGTFDTP EAAALAYDQA AFSARGAAAV LNFPVERVWE  120
SLGPLALAGS AGAGSSVLAL KRRHSKRTRR SKLSPTSKSL KTQRQPAMVH FSGLSGASGM  180
DMAASAARGG IAVSLLRHGG ARGPRLGADY LEELLRVSSE LHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-24561161474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G100600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276835e-87KJ727683.1 Zea mays clone pUT5611 AP2-EREBP transcription factor (EREB59) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685222.12e-88LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A2T7CMG47e-60A0A2T7CMG4_9POAL; Uncharacterized protein
STRINGTRIUR3_29784-P11e-43(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-29ethylene response factor 1