PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G100700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 258aa    MW: 27092.3 Da    PI: 6.1254
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G100700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.51e-1588137355
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr ++ +g+++AeIrd    + k +r+++g+f+++e Aa a+++a+ + +g
  Sevir.8G100700.1.p  88 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWIGTFDSPEAAALAYDQAAFAARG 137
                         57******.**********32..2.24**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.16787145IPR001471AP2/ERF domain
SMARTSM003803.7E-3087151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2688145IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2088147IPR016177DNA-binding domain
CDDcd000181.19E-1688146No hitNo description
PRINTSPR003673.0E-108899IPR001471AP2/ERF domain
PfamPF008476.9E-1288137IPR001471AP2/ERF domain
PRINTSPR003673.0E-10127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MGPSTIRDHQ HWSPGTVDTV DMPLDIDAFL IGSNADAAAA EECSDWLSPS SSTSSEVANV  60
SPSTPDVHQR PDAGTAPAAS PGDKRQAFIG VRKRPWGKFA AEIRDSTRKG ARVWIGTFDS  120
PEAAALAYDQ AAFAARGTTA VLNFPVECVR ESLGPLALAG GAGCGSPVLA LKRRHSKRTR  180
RRKVSPTGFS NSKSTLQDLQ PPAGQCSVVS GTAVDMPQQQ ATVSISQCPS GIVELDDLGD  240
AYLEKLLRVV SSELGEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-23881481575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G100700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022685223.10.0ethylene-responsive transcription factor ERF094-like
SwissprotQ8VYM01e-40ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A368S6690.0A0A368S669_SETIT; Uncharacterized protein
STRINGSi028088m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2764845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-25ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]