PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G110200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 553aa    MW: 58932.2 Da    PI: 6.7235
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G110200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.81.5e-14141200155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+ ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sevir.8G110200.1.p 141 SIYRGVTKHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 200
                         57*******************666664478446*************************98 PP
2AP247.15.9e-15243294155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sevir.8G110200.1.p 243 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 294
                         57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.57E-20141210No hitNo description
PfamPF008473.0E-11141200IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16141210IPR016177DNA-binding domain
SMARTSM003809.8E-29142214IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-14142209IPR001471AP2/ERF domain
PROSITE profilePS5103218.571142208IPR001471AP2/ERF domain
PRINTSPR003672.5E-6143154IPR001471AP2/ERF domain
PfamPF008477.3E-10243294IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18243304IPR016177DNA-binding domain
CDDcd000183.97E-23243304No hitNo description
SMARTSM003801.5E-33244308IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-18244303IPR001471AP2/ERF domain
PROSITE profilePS5103219.045244302IPR001471AP2/ERF domain
PRINTSPR003672.5E-6284304IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MGSTNNWLGF ASFSGAADDA AILPPLPPSP RGDGAGAEPK LEDFLGLQEP AATVAAGRPF  60
VGTGGASSIG LSMIKNWLRS QPAPEPAVAA DSMALAAVAV VSPEGSGKVT DDGAESGGGA  120
VVVAAQQRKA AAVDTFGQRT SIYRGVTKHR WTGRYEAHLW DNSCRREGQT RKGRQVYLGG  180
YDKEEKAARA YDLAALKYWG TTTTTNFQIS NYEKELEEMK HMSRQEYVAS LRRKSSGFSR  240
GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLNAVTN  300
FDMSRYDVKS IIESSSLPVG GTTKRLKDVP DQSDMGRNGH SADSVGHMTA TNLLTDGIGS  360
YGPENYGYSG WSPAAMTSIP LQFSNGHDQS RLWCKPEQDS AVVAAAHNLH HLQHFPAPGG  420
THNFFQPSPI QDMTGVADDS SPSVDSNSFS YNGSVGYHGA MGGGYAMPVT TLVEGNPAAS  480
GYGVEEGTTD VYDCRNIYYL SQGSPGANTG KPEAYDQQGA GYESWVPAVP VISQKAANVT  540
VCHGTPLYSV WK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G110200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3174440.0HQ317444.1 Cenchrus ciliaris clone C164L13 AP2 domain-containing protein gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979180.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ6PQQ41e-131BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A368S6J60.0A0A368S6J6_SETIT; Uncharacterized protein
STRINGSi028170m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP156937110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-122AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]