PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G133300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 205aa    MW: 21339 Da    PI: 11.5733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G133300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-191969256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++  grWvAeI+d      +r r +lg+f+taeeAa+a+++a+ +l+ge
  Sevir.8G133300.1.p 19 RFVGVRQRP-LGRWVAEIKD----SaQRVRLWLGTFDTAEEAARAYDEAAHALRGE 69
                        589******.8*********....4456**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-271976IPR001471AP2/ERF domain
PfamPF008473.0E-141969IPR001471AP2/ERF domain
CDDcd000184.81E-251976No hitNo description
SMARTSM003802.5E-301982IPR001471AP2/ERF domain
PROSITE profilePS5103220.2571976IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-192076IPR016177DNA-binding domain
PRINTSPR003672.5E-82031IPR001471AP2/ERF domain
PRINTSPR003672.5E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGATKESGGR AATACRGRRF VGVRQRPLGR WVAEIKDSAQ RVRLWLGTFD TAEEAARAYD  60
EAAHALRGES TRTNFAGRAR YCGGGGGAAR ARLSKNLQHV MARVAAAGRA TACAGVGEQF  120
ALAAVFRRCQ QPAAAAPAPP QTPQQAEAAR AAKHAVHPSF VVPRRTAAAP PPSSSALGAG  180
DPWGADDAAE LLRVQERSFN LSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-17675271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G133300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661124.11e-139dehydration-responsive element-binding protein 2B
TrEMBLA0A368S7C41e-141A0A368S7C4_SETIT; Uncharacterized protein
STRINGSi027288m1e-137(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124292634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-17related to AP2 11