PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G169600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GATA
Protein Properties Length: 154aa    MW: 16869.3 Da    PI: 11.2548
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G169600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA43.64.1e-1495130134
                GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                         C+ Cg ++  Tp++Rrgp+g +t CnaCGl+++k++
  Sevir.8G169600.1.p  95 CAKCGESSeaTPMMRRGPNGYRTFCNACGLMWAKTN 130
                         *********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510178.6613275IPR010402CCT domain
PfamPF062032.5E-113275IPR010402CCT domain
SuperFamilySSF577162.33E-988137No hitNo description
SMARTSM004011.8E-689142IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-1394135IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.03E-994139No hitNo description
PfamPF003209.7E-1295130IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MLLNGYELVP QSAKPQLTHL VQPIVVPRDF DRTAAVSRYR EKRKSTLKFD VKADYSIRRE  60
IASRIARRRG KFVSSDKSSD NSVAAAARRR QRESCAKCGE SSEATPMMRR GPNGYRTFCN  120
ACGLMWAKTN KIRKLTNPDC GGGRGGGGGG GSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149GGRGGGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G169600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828797.13e-65GATA transcription factor 20-like
TrEMBLK3ZLQ77e-92K3ZLQ7_SETIT; Uncharacterized protein
STRINGSi027518m1e-92(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP158801213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-21ZIM-LIKE 2