PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G184400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ZF-HD
Protein Properties Length: 324aa    MW: 35198.9 Da    PI: 5.2061
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G184400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.22.6e-303488457
         ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                         +Y+eClkNhAaslGgha+DGCgEfmps++++ +++a l+CaACgCHRnFH r +
  Sevir.8G184400.1.p 34 GVYRECLKNHAASLGGHALDGCGEFMPSSKADpADPALLRCAACGCHRNFHHRLP 88
                        58**************************999999*****************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-263586IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-203686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.9E-283686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.0843687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.3E-6197231IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVAGNNEHYP MDDITVRTPY VTHDGGGGVR REAGVYRECL KNHAASLGGH ALDGCGEFMP  60
SSKADPADPA LLRCAACGCH RNFHHRLPEA PPSPPLLALP PPLPTQPASV PQHVMHEAPE  120
DRLPATFDDD ETDESGEGSD FDEDRLLSPL SPLAMGLPGY LQPVPHMLLV LSTGAPGASI  180
PTVVPRPPAS LGPMPAPGAA STVARKRFRT KFSPEQKQGM QALSERPGCH LQMCLKQEDG  240
NNLCGYHCCE FIHIIIGPKK ITAQEYKIFE MRDKLITTEQ LKAIWEQLCG FLLEEVVNPK  300
EEFYYDGTSV GQLHPIRDSD DDA*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G184400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056365e-42AP005636.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0707C02.
GenBankAP0149655e-42AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126175e-42CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972095.13e-89zinc-finger homeodomain protein 10
SwissprotQ6ER216e-37ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLK3XQK81e-86K3XQK8_SETIT; Uncharacterized protein
STRINGSi004194m3e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-28zinc finger homeodomain 1