PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G248600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 222aa    MW: 23561.7 Da    PI: 8.4962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G248600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.1e-1555105255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         g+ GVr ++ +g ++AeIrd + +g  +r++lg+f+t+e Aa a+++a+ + +g
  Sevir.8G248600.1.p  55 GFIGVRPRP-WGTFAAEIRDSTRRG--ARVWLGTFDTPEAAALAYDQAAFSARG 105
                         789***999.**********43343..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-2055114IPR016177DNA-binding domain
PfamPF008477.8E-1155105IPR001471AP2/ERF domain
PROSITE profilePS5103220.82455113IPR001471AP2/ERF domain
SMARTSM003801.1E-2755119IPR001471AP2/ERF domain
PRINTSPR003672.9E-75667IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-2656113IPR001471AP2/ERF domain
PRINTSPR003672.9E-77995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MDAAAVAKEC SDGLSSTSSS STVAGMVWPT TLDQQQQPPD AGASPSPGET EKREGFIGVR  60
PRPWGTFAAE IRDSTRRGAR VWLGTFDTPE AAALAYDQAA FSARGAAAVL NFPVDRVRES  120
LAPLALAAGV GGGSPVLALK RRHSKRRTRR RRKRLCSKCM ADGKDLQPPC QCSDVSATAM  180
AVPQQQVTAA RCQVRFGVLE LEDLGADYLD ELLRISCELA A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-23561131572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139153KRRHSKRRTRRRRKR
2140154RRHSKRRTRRRRKRL
3144153KRRTRRRRKR
4145153RRTRRRRKR
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G248600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004979997.11e-155ethylene-responsive transcription factor ERF094
SwissprotQ8VYM05e-40ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A368SCQ31e-154A0A368SCQ3_SETIT; Uncharacterized protein
STRINGSi028219m1e-135(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3228924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-28ethylene response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]