PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G257600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 188aa    MW: 20397.8 Da    PI: 7.8481
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G257600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00024128150123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         + C+ Cg  Fs+   L  H+r+H
  Sevir.8G257600.1.p 128 HACGTCGLGFSTGQALGGHMRRH 150
                         67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.4E-988113IPR007087Zinc finger, C2H2
SuperFamilySSF576671.74E-788150No hitNo description
SMARTSM003550.9989111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2489116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
PfamPF139122.7E-9127152IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138128155IPR007087Zinc finger, C2H2
SMARTSM003550.93128150IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280130150IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MKRGRDDAIA AMGDDNNDRY PLGEEEEDGV EEEDRHQQRA ACDVLLSLSC GSSSGSSSTS  60
GEEEAAGTAA VPPLNKRLRR RRRGRDDAFE CRTCGRKFMT FQALGGHRSS HLRRPPATKL  120
RPKEVAVHAC GTCGLGFSTG QALGGHMRRH RGPTTTEDDF GYVGLPQIIM QQDRPSSASL  180
PLLNLFV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G257600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703899.11e-135zinc finger protein ZAT11
TrEMBLA0A368SBB61e-133A0A368SBB6_SETIT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-21C2H2 family protein