PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.8G258400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 142aa    MW: 14740.9 Da    PI: 10.7829
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.8G258400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0013961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C  Cg++F++   L  H  +H
  Sevir.8G258400.1.p 39 FRCRTCGRCFRTFQALGGHRTSH 61
                        89**********99998888877 PP
2zf-C2H217.41.2e-0588110123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg++F +   L  H+r+H
  Sevir.8G258400.1.p  88 HRCNTCGMVFATGQALGGHMRRH 110
                         79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-83863IPR007087Zinc finger, C2H2
SuperFamilySSF576676.81E-839110No hitNo description
SMARTSM003550.493961IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5963966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
PfamPF139122.3E-1187112IPR007087Zinc finger, C2H2
SMARTSM003550.01388110IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.68188115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MATSTARSTT AADLLLYLSL STASKVIAKK GGGGGGGAFR CRTCGRCFRT FQALGGHRTS  60
HKRPRVRADG LELLLGARPG KGAASDVHRC NTCGMVFATG QALGGHMRRH RAVPETTATA  120
TAFGDSEDDA GHLPIKLIEF I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.8G258400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980055.17e-74zinc finger protein ZAT8
TrEMBLK3ZK671e-72K3ZK67_SETIT; Uncharacterized protein
STRINGSi026973m3e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67302650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.13e-16C2H2 family protein