PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.9G033200.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

C2H2

Protein Properties

Length: 148aa MW: 15009.2 Da PI: 10.6492

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.9G033200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg F L H+r+H Sevir.9G033200.1.p 106 HQCHVCGLGFEMGQALGGHMRRH 128 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.93	46	73	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.96	46	68	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.29E-6	46	68	No hit	No description
Pfam	PF13912	6.7E-10	46	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	48	68	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.29E-6	101	128	No hit	No description
SMART	SM00355	0.31	106	128	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	3.3E-10	106	131	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.764	106	133	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MTKHPRDAAA GDVTLSLALS LGGLLPGEHG AKKPRRTGGG GGEGEFVCKT CSRAFASFQA 60 LGGHRTSHLR GRHGLALGMP TTATPGKQAA AAKDPKAPAP HAAASHQCHV CGLGFEMGQA 120 LGGHMRRHRE EAAAAAQAPP VLLQLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.9G033200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT086979	3e-35	BT086979.2 Zea mays full-length cDNA clone ZM_BFb0223D14 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981258.1	2e-99	zinc finger protein ZAT8
TrEMBL	A0A368SCQ9	4e-98	A0A368SCQ9_SETIT; Uncharacterized protein
TrEMBL	K4AEE4	2e-97	K4AEE4_SETIT; Uncharacterized protein
STRING	Si037251m	4e-98	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1305	30	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G46070.1	5e-18	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Sevir.9G033200.1.p